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Institut Pasteur

Recent key publications include the following:

▪       Vandenbogaert M, Li-Thiao-Te S, Kaltenbach HM, Zhang R, Aittokallio T, Schwikowski B (2008) ''Alignment of LC-MS images, with applications to biomarker discovery and protein identification.'' Proteomics 8(4): 650-672

▪       Prakash A, Piening B, Whiteaker J, Zhang H, Shaffer SA, Martin D, Hohmann L, Cooke K, Olson JM, Hansen S, Flory MR, Lee H, Watts J, Goodlett DR, Aebersold R, Paulovich A, Schwikowski B (2007) ''Assessing bias in experiment design for large-scale mass spectrometry-based quantitative proteomics.'' Mol Cell Proteomics 6: 1741-1748

▪       Prakash A, Mallick P, Whiteaker J, Zhang H, Paulovich A, Flory M, Lee H, Aebersold R, Schwikowski B (2006) ''Signal Maps for Mass Spectrometry-based Comparative Proteomics.'' Mol Cell Proteomics 5(3): 423-432

▪       Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maere S, Morris J, Ono K, Pavlovic V, Pico AR, Vailaya A, Wang PL, Adler A, Conklin BR, Hood L, Kuiper M, Sander C, Schmulevich I, Schwikowski B, Warner GJ, Ideker T, Bader GD (2007) ''Integration of biological networks and gene expression data using Cytoscape.'' Nat Protoc 2(10): 2366-2382